Datasets and challenges summary of the head and neck¶

Head & Neck — Head & Neck¶

Datasets and challenges summary of the basic brain image analysis.¶

Most of these datasets and challenges are the segmentation tasks, while some of the other tasks are about reconstruction. WM is short for white matter; GM is short for graymatter; CSF is short for cerebrospinal fluid.

Index	Name	Year	Modality	Segmentation/Focus
1	CEREBRuM	2019	T1w	WM, GM, CSF, etc.
2	iSeg-2019	2019	T1, T2	WM, GM, CSF, etc.
3	iSeg-2017	2017	T1w, T2w	WM, GM, CSF, etc.
4	MRBrainS18	2018	T1w, T1w-IR, T2-FLAIR	WM, GM, CSF, etc.
5	NEATBrainS 15	2015	T1w, T1WIR, T2FLAIR	WM, GM, CSF, etc.
6	MRBrainS 13	2013	T1w, T1W-IR, T2-FLAIR	WM, GM, CSF, etc.
7	Neonatal MRBrainS 2012	2012	T1, T2	WM, GM, CSF, etc.
8	WMH Segmentation Challenge	2017	T1	WM, GM, CSF, etc.
9	ENIGMA Cerebellum	2017		Cerebellum
10	Mindboggle	2012	T1w, etc.	brain atlases
11	Labeled Brain Scans	2012	T1, etc.	brain atlases
12	CAUSE07	2007	T1	Caudate
13	AutoImplant	2020	CT	Cranioplasty
14	AccelMR 2020 Prediction Challenge	2020	T1, T2	the non-linear mapping between different resolutions
15	MRI White Matter Reconstruction	2020	dMRI	white matter reconstruction
16	Calgary-Campinas Public Brain MR Dataset	2020	MRI	brain image reconstruction
17	Multi-channel MR Image Reconstruction Challenge	2020	T1w	MRI reconstruction
18	FastMRI	2018	T1w, T2w, etc.	Accelerating magnetic resonance imaging
19	Multi-shell diffusion MRI harmonisation and enhancement	2018	DW	DW MRI registration and enhancement
20	HARDI reconstruction challenge 2013	2013	Diffusion	Diffusion MRI reconstruction
21	HARDI reconstruction challenge 2012	2012	Diffusion	Diffusion MRI reconstruction
22	CuRIOUS 2019	2019	MRI, Ultrasound	image registration
23	CuRIOUS 2018	2018	MRI, Ultrasound	image registration

Datasets and challenges summary of the brain lesion and tumor segmentation task.¶

The focuses on the datasets and challenges include the brain tumor, particularly glioma, and the lesions about the stroke.

Index	Name	Year	Modality	Focus
27	CADA-AS	2020	MRI	cerebral aneurysm segmentation
28	CADA-RRE	2020	MRI	cerebral aneurysm rupture risk estimation
29	CADA	2020	MRI	cerebral aneurysm detection
30	BraTS 2020	2020	T1, T1Gd, T2, T2-FLAIR	Multi-model & brain tumor
31	BraTS 2019	2019	T1, T1Gd, T2, T2-FLAIR	Multi-model & brain tumor
32	BraTS 2018	2018	T1, T1Gd, T2, T2-FLAIR	Multi-model & brain tumor
33	BraTS 2017	2017	T1, T1Gd, T2, T2-FLAIR	Multi-model & brain tumor
34	BraTS 2016	2016	T1, T1c, T2, T2w-FLAIR	Multi-model & brain tumor
35	BraTS 2015	2015	T1, T1c, T2, T2w-FLAIR	Multi-model & brain tumor
36	BraTS 2014	2014	T1, T1c, T2, T2w-FLAIR	Multi-model & brain tumor
37	BraTS 2013	2013	T1, T1c, T2, T2w-FLAIR	Multi-model & brain tumor
38	BraTS 2012	2012	T1, T1c, T2, T2w-FLAIR	Multi-model & brain tumor
39	ISLES 2018	2018	DWI, Perfusion, etc.	ischemic stroke lesion
40	ISLES 2017	2017	T2w, FLAIR, etc.	ischemic stroke lesion
41	ISLES 2016	2016	ADC, Perfusion, etc.	ischemic stroke lesion
42	ISLES 2015	2015	T1, T2, FLAIR, etc.	ischemic stroke lesion
43	Computed Tomography Images for Intracranial Hemorrhage Detection and Segmentation	2020	CT	intracranial hemorrhage detection and segmentation
44	RSNA Intracranial Hemorrhage Detection	2019	CT	intracranial hemorrhage detection
46	Brain Tumor Progression	2018	T1w, FLAIR, T2w, etc.	brain tumor
47	LGG-1p19qDeletion	2017	T1w, T2w	Low-grade gliomas
48	Anatomical Tracings of Lesions After Stroke	2017	T1w	anatomical segmentation of brain after stroke
49	MSSEG Challenge	2016	T1w, DP/T2, FLAIR	multiple sclerosis
50	Longitudinal Multiple Sclerosis Lesion Segmentation Challenge (2015)	2015	T1w, T2w, PDw, FLAIR	longitudinal multiple sclerosis lesion
51	MS lesion segmentation challenge 2008	2008	T1, T2, FLAIR	multiple sclerosis lesion

Datasets and challenges summary of brain disease classification tasks.¶

AD is short for Alzheimer’s detection; PD is short for Parkinson’s disease; SCA2 is short for Spinocerebellar ataxia type II; NC is short for normal control.

Index	Name	Year	Modality	Disease	Category
52	ADNI-1	2004	MRI, PET	AD	NC, MCI, AD
53	ADNI-GO	2009	MRI, PET	AD	NC, MCI, AD
54	ADNI-2	2011	MRI, PET	AD	NC, EMCI, LMCI, AD
55	ADNI-3	2016	MRI, PET	AD	NC, EMCI, LMCI, AD
56	OASIS 1	2007	T1w	AD	NC, AD
57	OASIS 2	2009	T1w	AD	NC, AD
58	OASIS 3	2019	T1w, T2w, FLAIR, PET, etc.	AD	NC, AD
59	MRIHS	2019		AD	NC, AD
60	TADPOLE	2017	MRI,PET,DTI,CSF, etc.	AD	NC, MCI, AD
61	MRI and Alzheimers	2017	T1w	AD	NC, AD
62	CADDementia	2014	T1w	AD	NC, MCI, AD
63	ANT: Healthy aging and Parkinson’s disease	2019	T1, event, bold	PD	NC, PD
64	PD De Novo: Resting State fMRI and Physiological Signals	2018	T1w, bold	PD	NC, PD
65	SCA2 Diffusion Tensor Imaging	2018	T1w, dwi	SCA2	NC, SCA2
66	MTOP - Mild Traumatic Brain Injury Outcome Prediction	2016	T1w, DWI, etc.	mild traumatic brain injury outcome prediction	healthy, patient category I or patient category II

Datasets and challenges summary of eye-disease-concerned tasks.¶

Tasks include classification (C), segmentation (S), location (L), and tool annotation (1).

Index	Name	Year	Modality	Disease	Task
67	Retinal Image Analysis for multi-Disease Detection Challenge	2020	fundus photo	fundus-concered diseases	C
68	The 2nd Diabetic Retinopathy – Grading and Image Quality Estimation Challenge	2020	fundus photo	diabetic retinopathy	C
69	REFUGE 2	2020	fundus photo	glaucoma	C	S	L
70	REFUGE	2018	fundus photo	glaucoma	C	S	L
71	AGE	2019	OCT	closure glaucoma	C		L
72	DRIVE	2019	fundus photo	(vessel extraction)		S
73	ODIR-2019	2019	fundus photo	diabetes, glaucoma, cataract, AMD, hypertension, myopia, and others	C
74	PALM	2019	fundus photo	Pathologic Myopia	C	S	L
75	APTOS 2019 Blindness Detection	2019	fundus photo	diabetic retinopathy	C
76	ADAM	2018	fundus photo	Age-related Macular degeneration	C		L
77	IDRiD	2018	fundus photo	diabetic retinopathy and diabetic macular edema	C	S	L
78	Retinal OCT Images	2018	OCT	macular degeneration and diabetic retinopathy	C
79	ROCC	2017	OCT	diabetic retinopathy	C
80	CATARACTS	2017	video	(automatic tool annotation)				1
81	RETOUCH	2017	OCT	(fluid segmentation)		S
82	Diabetic Retinopathy Detection	2015	fundus photo	diabetic retinopathy	C
83	Segmentation of OCT images (DME)	2015	OCT	diabetic macular edema		S
84	ROC	2009	fundus photo	diabetic retinopathy			L

Datasets and challenges summary of other subjects in head and neck.¶

Tasks includes classification (C), segmentation (S), detection (D), and location (L).

Index	Name	Year	Modality	Focus	Task
85	MICCAI 2020: HECKTOR	2020	CT, PET	segmentation of head and neck primary tumors	S
86	Thyroid Nodule Segmentation and Classification in Ultrasound Images	2020	Ultrasound	thyroid gland nodules diagnosis	D
87	Head Neck Radiomics HN1	2019	CT	head and neck squamous cell carcinoma	S
88	AAPM RT-MAC 2019	2019	T2w	Soft tissue and tumor	S
89	Head Neck PET-CT	2017	PET, CT	tumor	C
90	Head and Neck Auto Segmentation Challenge	2015	CT	tumor	S
91	Ultrasound Nerve Segmentation	2016	Ultrasound	nerve segmentation	S
92	Grand Challenges in Dental X-ray Image Analysis: Challenge 1	2015	X-Ray	Cephalometric X-Ray image location	L
93	Grand Challenges in Dental X-ray Image Analysis: Challenge 2	2015	X-Ray	detection and segmentation of caries	S
94	Head & Neck Auto-segmentation Challenge 2010	2010	MRI	parotid gland	S
95	Head & Neck Auto-segmentation Challenge 2009	2009	CT	multi organs and tissues	S
96	The Carotid Bifurcation Algorithm Evaluation Framework	2009	CTA	carotid bifurcation	S

Datasets summary of behavioral and perception concerning tasks.¶

Index	Name	Year	Modality	Task	Stimulation
97	Cognitive control of sensory pain encoding in the pregenual anterior cingulate cortex.	2020	T1w, bold	Sensory pain encoding	pain
98	fMRI dataset on program comprehension and expertise	2020	T1w, bold, events	Different between expert and novices in cortical representations of source code	brain action
99	Reconstructing Faces from fMRI Patterns using Deep Generative Neural Networks.	2019	T1w	Faces Reconstruction	vision
100	Resting State - TMS	2019	T1, bold	effect of iTBS on fronto-striatal network;, ROI segmentation	iTBS
101	Deep Image Reconstruction	2018	T1w, inplaneT2, bold, events	Image reconstruction from human brain activity	vision
102	BOLD5000	2018	bold, T2w, T1w, dwi, fieldmap	Brain reaction of vision	vision
103	Neural Processing of Emotional Musical and Nonmusical Stimuli in Depression	2018	T1w, bold	Brain reaction of audition	audition
104	Visual image reconstruction	2018	inplaneT2, bold, T1w	Image reconstruction from human brain activity	vision
105	Generic Object Decoding	2018	T1w, inplaneT2, bold, events	Image reconstruction from human brain activity	vision
106	Adjudicating between face-coding models with individual-face fMRI responses	2018	T1w etc.	Decoding face from brain activity	vision
107	T1-weighted structural MRI study of cannabis users at baseline and 3 years follow up	2018	T1w	Cannabis impact of brain	cannabis