Datasets and challenges summary of the pathology and blood =========================================================== .. figure:: figures/pathology-blood.png :alt: Pathology & Blood Pathology & Blood Datasets and challenges summary of pathology-concerned tasks. ````````````````````````````````````````````````````````````` Tasks include classification (**C**), segmentation (**S**), detection (**D**), tracking (**2**), counting (**1**), location (**3**), nonlinear image registration (**4**), visual question answering (**5**). +-----------+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+----------+-------------------------------------------------+----------+-----+-----+-----+---------------------+ | **Index** | **Name** | **Year** | **Focus** | **Task** | **Stain** | +===========+==========================================================================================================================================================================================================+==========+=================================================+==========+=====+=====+=====+=====================+ | 233 | `Pathology Visual Question Answering `_ | 2020 | visual question answering | | | | 5 | H&E | +-----------+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+----------+-------------------------------------------------+----------+-----+-----+-----+---------------------+ | 234 | `Prostate cANcer graDe Assessment (PANDA) Challenge `_ | 2020 | prostate cancer grade assessment | C | | | | H&E | +-----------+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+----------+-------------------------------------------------+----------+-----+-----+-----+---------------------+ | 235 | `PAIP 2020 `_ | 2020 | colorectal cancer | C | S | | | H&E | +-----------+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+----------+-------------------------------------------------+----------+-----+-----+-----+---------------------+ | 236 | `MICCAI 2020 Combined Radiology and Pathology Classification Challenge `_ | 2020 | combined radiology and pathology classification | C | | | | H&E | +-----------+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+----------+-------------------------------------------------+----------+-----+-----+-----+---------------------+ | 237 | `HEROHE `_ | 2020 | HER2 | C | | | | H&E | +-----------+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+----------+-------------------------------------------------+----------+-----+-----+-----+---------------------+ | 238 | `MoNuSAC `_ | 2020 | multi-organ nucleus | C | S | | | H&E | +-----------+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+----------+-------------------------------------------------+----------+-----+-----+-----+---------------------+ | 239 | `Assessment of Residual Breast Cancer Cellularity after Neoadjuvant Chemotherapy using Digital Pathology (Post-NAT-BRCA) `_ | 2019 | cell | C | S | | 1 | H&E | +-----------+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+----------+-------------------------------------------------+----------+-----+-----+-----+---------------------+ | 240 | `Osteosarcoma data from UT Southwestern/UT Dallas for Viable and Necrotic Tumor Assessment `_ | 2019 | osteosarcoma pathology image | C | | | | H&E | +-----------+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+----------+-------------------------------------------------+----------+-----+-----+-----+---------------------+ | 241 | `Digestive-System Pathological Detection and Segmentation Challenge 2019 `_ | 2019 | signet ring cell | C | S | D | | H&E | +-----------+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+----------+-------------------------------------------------+----------+-----+-----+-----+---------------------+ | 242 | `LYON 19 `_ | 2019 | lymphocyte | | | D | 3 | IHC | +-----------+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+----------+-------------------------------------------------+----------+-----+-----+-----+---------------------+ | 243 | `ANHIR `_ | 2019 | pathology image registration | | | | 4 | - | +-----------+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+----------+-------------------------------------------------+----------+-----+-----+-----+---------------------+ | 244 | `Breast Metastases to Axillary Lymph Nodes `_ | 2019 | breast cancer metastases to lymph | | | D | | H&E | +-----------+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+----------+-------------------------------------------------+----------+-----+-----+-----+---------------------+ | 245 | `Gleason 2019 `_ | 2019 | Gleason grade/score prediction | C | | | | H&E | +-----------+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+----------+-------------------------------------------------+----------+-----+-----+-----+---------------------+ | 246 | `PAIP 2019 `_ | 2019 | segmentation of liver cancer & tumor burden | C | S | | | H&E | +-----------+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+----------+-------------------------------------------------+----------+-----+-----+-----+---------------------+ | 247 | `Automatic Cancer Detection and Classification in Whole-slide Lung Histopathology (ACDC@LUNGHP) `_ | 2019 | lung cancer | C | S | | | H&E | +-----------+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+----------+-------------------------------------------------+----------+-----+-----+-----+---------------------+ | 248 | `MoNuSeg `_ | 2018 | multi-organ nucleus | | S | | | H&E | +-----------+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+----------+-------------------------------------------------+----------+-----+-----+-----+---------------------+ | 249 | `Data Science Bowl 2018 `_ | 2018 | cell | | S | | | H&E | +-----------+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+----------+-------------------------------------------------+----------+-----+-----+-----+---------------------+ | 250 | `Patch Camelyon `_ | 2019 | pathology image patch | C | | | | H&E | +-----------+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+----------+-------------------------------------------------+----------+-----+-----+-----+---------------------+ | 251 | `ICIAR 2018 BACH `_ | 2018 | patch of breast cancer | C | | | | H&E | +-----------+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+----------+-------------------------------------------------+----------+-----+-----+-----+---------------------+ | 252 | `Colorectal Histology MNIST `_ | 2018 | colorectal pathology patch | C | | | | H&E | +-----------+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+----------+-------------------------------------------------+----------+-----+-----+-----+---------------------+ | 254 | `CAMELYON 17 `_ | 2017 | breast cancer metastases | C | | D | | H&E | +-----------+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+----------+-------------------------------------------------+----------+-----+-----+-----+---------------------+ | 253 | `A Grand Challenge for Tissue Microarray Analysis in Thyroid Cancer Diagnosis `_ | 2017 | thyroid cancer | C | | | | H&E | +-----------+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+----------+-------------------------------------------------+----------+-----+-----+-----+---------------------+ | 255 | `CAMELYON 16 `_ | 2016 | breast cancer metastases | C | | D | | H&E | +-----------+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+----------+-------------------------------------------------+----------+-----+-----+-----+---------------------+ | 256 | `GlaS `_ | 2015 | colorectal cancer pathology patch | C | | | | H&E | +-----------+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+----------+-------------------------------------------------+----------+-----+-----+-----+---------------------+ | 257 | `The Second Overlapping Cervical Cytology Image Segmentation Challenge `_ | 2015 | overlapping cervical cell | | S | | | Papanicolaou | +-----------+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+----------+-------------------------------------------------+----------+-----+-----+-----+---------------------+ | 258 | `Overlapping Cervical Cytology Image Segmentation Challenge `_ | 2014 | overlapping cervical cell | | S | | | Papanicolaou | +-----------+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+----------+-------------------------------------------------+----------+-----+-----+-----+---------------------+ | 259 | `MITOS-ATYPIA-14 `_ | 2014 | mitotic | | | D | | H&E | +-----------+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+----------+-------------------------------------------------+----------+-----+-----+-----+---------------------+ | 260 | `Cell Tracking Challenge `_ | 2020 | cell | | | | 2 | electron microscope | +-----------+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+----------+-------------------------------------------------+----------+-----+-----+-----+---------------------+ | 261 | `Particle Tracking Challenge `_ | 2012 | particle | | | | 2 | electron microscope | +-----------+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+----------+-------------------------------------------------+----------+-----+-----+-----+---------------------+ Datasets and challenges summary of blood concerned tasks. ````````````````````````````````````````````````````````` Tasks include classification (**C**), detection (**D**), segmentation (**1**), assessment (**2**), and stain normalization (**3**). +-----------+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+----------+----------------------------------------+----------+-----+-----+-----------------------+ | **Index** | **Name** | **Year** | **Focus** | **Task** | **Stain** | +===========+==================================================================================================================================================================================================================================+==========+========================================+==========+=====+=====+=======================+ | 262 | `SegPC 2021 `_ | 2020 | myeloma plasma cell | | | 1 | Jenner-Giemsa | +-----------+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+----------+----------------------------------------+----------+-----+-----+-----------------------+ | 263 | `MitoEM Challenge `_ | 2020 | mitochondria | | S | | (electron microscope) | +-----------+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+----------+----------------------------------------+----------+-----+-----+-----------------------+ | 264 | `A Single-cell Morphological Dataset of Leukocytes from AML Patients and Non-malignant Controls `_ | 2019 | blast cells in acute myeloid leukaemia | C | D | | - | +-----------+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+----------+----------------------------------------+----------+-----+-----+-----------------------+ | 265 | `B-ALL Classification of Normal versus Malignant Cells `_ | 2019 | immature leukemic blasts | C | D | | - | +-----------+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+----------+----------------------------------------+----------+-----+-----+-----------------------+ | 266 | `Malaria Bounding Boxes `_ | 2019 | cells in blood | C | D | | Giemsa | +-----------+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+----------+----------------------------------------+----------+-----+-----+-----------------------+ | 267 | `LYSTO `_ | 2019 | lymphocytes | | | 2 | - | +-----------+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+----------+----------------------------------------+----------+-----+-----+-----------------------+ | 268 | `MiMM\_SBILab Dataset: Microscopic Images of Multiple Myeloma `_ | 2019 | cell | | S | | Jenner-Giemsa | +-----------+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+----------+----------------------------------------+----------+-----+-----+-----------------------+ | 269 | `SN-AM Dataset: White Blood cancer dataset of B-ALL and MM for stain normalization `_ | 2019 | stain normalization | | | 3 | Jenner-Giemsa | +-----------+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+----------+----------------------------------------+----------+-----+-----+-----------------------+ | 271 | `Blood Cell Images `_ | 2018 | cells in blood | C | | | Jenner-Giemsa | +-----------+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+----------+----------------------------------------+----------+-----+-----+-----------------------+